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A number of evolutionary studies show a strong phylogenetic link between prokaryotic and eukaryotic cells, Eukaryotes shared a common ancestor with species in the domain Archaea is the best statement about the evolutionary origins of eukaryotic cells
The "informational" genes of eukaryotic organisms are most closely related to archaeal genes, while the "operational" genes are most closely related to bacterial genes. According to recent evidence, Archaea and Eukarya are more closely related to each other than either is to Bacteria. The evidence suggests that all three domains of life share a common ancestor who lived more than 3 billion years ago (bya). This ancestor gave rise to two lines of descent. In the years since, molecular phylogenetic analyses have revealed that eukaryotes and Archaea are sister groups in the tree of life. During the genomic era, it became clear that eukaryotic cells have a mix of archaeal and bacterial characteristics, as well as eukaryotic-specific characteristics.
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